Hypercluster
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Documentation for hypercluster
Contents:
hypercluster package
hypercluster SnakeMake pipeline
Hypercluster
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Z
A
algorithm_clus_kwargs (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
algorithm_names (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
algorithm_param_weights (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
algorithm_parameters (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
AutoClusterer (class in hypercluster)
(class in hypercluster.classes)
autoclusterers (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
C
calculate_row_weights() (in module hypercluster.utilities)
categories (in module hypercluster.constants)
clus_kwargs (hypercluster.AutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
cluster() (in module hypercluster.utilities)
Clusterer (class in hypercluster.classes)
clusterer_name (hypercluster.AutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
compute_order() (in module hypercluster.visualize)
convert_to_multiind() (in module hypercluster.utilities)
D
data (hypercluster.AutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
(hypercluster.classes.MultiAutoClusterer attribute)
E
evaluate() (hypercluster.AutoClusterer method)
(hypercluster.MultiAutoClusterer method)
(hypercluster.classes.AutoClusterer method)
(hypercluster.classes.MultiAutoClusterer method)
evaluate_one() (in module hypercluster.utilities)
evaluation_ (hypercluster.AutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
(hypercluster.classes.MultiAutoClusterer attribute)
evaluation_df (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
evaluation_methods (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
F
fit() (hypercluster.additional_clusterers.LeidenCluster method)
(hypercluster.AutoClusterer method)
(hypercluster.MultiAutoClusterer method)
(hypercluster.additional_clusterers.LouvainCluster method)
(hypercluster.additional_clusterers.NMFCluster method)
(hypercluster.classes.AutoClusterer method)
(hypercluster.classes.MultiAutoClusterer method)
fit_predict() (hypercluster.classes.Clusterer method)
G
generate_flattened_df() (in module hypercluster.utilities)
generate_param_sets() (hypercluster.AutoClusterer method)
(hypercluster.classes.AutoClusterer method)
gold_standard (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
H
HDBSCAN (in module hypercluster.additional_clusterers)
hypercluster (module)
hypercluster.additional_clusterers (module)
hypercluster.additional_metrics (module)
hypercluster.classes (module)
hypercluster.constants (module)
hypercluster.utilities (module)
hypercluster.visualize (module)
I
inherent_metrics (in module hypercluster.constants)
L
labels_ (hypercluster.AutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
(hypercluster.classes.MultiAutoClusterer attribute)
labels_df (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
largest_cluster_size() (in module hypercluster.additional_metrics)
LeidenCluster (class in hypercluster.additional_clusterers)
LouvainCluster (class in hypercluster.additional_clusterers)
M
metric_kwargs (hypercluster.classes.MultiAutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
min_or_max (in module hypercluster.constants)
MultiAutoClusterer (class in hypercluster)
(class in hypercluster.classes)
N
need_ground_truth (in module hypercluster.constants)
NMFCluster (class in hypercluster.additional_clusterers)
number_clustered() (in module hypercluster.additional_metrics)
number_of_clusters() (in module hypercluster.additional_metrics)
P
param_delim (in module hypercluster.constants)
param_weights (hypercluster.AutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
params_to_optimize (hypercluster.AutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
pick_best_labels() (hypercluster.classes.Clusterer method)
(in module hypercluster.utilities)
R
random_search (hypercluster.AutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
(hypercluster.classes.MultiAutoClusterer attribute)
random_search_fraction (hypercluster.AutoClusterer attribute)
(hypercluster.MultiAutoClusterer attribute)
(hypercluster.classes.AutoClusterer attribute)
(hypercluster.classes.MultiAutoClusterer attribute)
S
smallest_cluster_ratio() (in module hypercluster.additional_metrics)
smallest_cluster_size() (in module hypercluster.additional_metrics)
smallest_largest_clusters_ratio() (in module hypercluster.additional_metrics)
V
val_delim (in module hypercluster.constants)
variables_to_optimize (in module hypercluster.constants)
visualize_evaluations() (hypercluster.classes.Clusterer method)
(in module hypercluster.visualize)
visualize_for_picking_labels() (hypercluster.classes.Clusterer method)
(in module hypercluster.visualize)
visualize_label_agreement() (hypercluster.classes.Clusterer method)
(in module hypercluster.visualize)
visualize_pairwise() (in module hypercluster.visualize)
visualize_sample_label_consistency() (hypercluster.classes.Clusterer method)
(in module hypercluster.visualize)
Z
zscore() (in module hypercluster.visualize)
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